Identification of Tumor Evolution Patterns by Means of Inductive Logic Programming

In considering key events of genomic disorders in the development and progression of cancer, the correlation between genomic instability and carcinogenesis is currently under investigation. In this work, we propose an inductive logic programming approach to the problem of modeling evolution patterns for breast cancer. Using this approach, it is possible to extract fingerprints of stages of the disease that can be used in order to develop and deliver the most adequate therapies to patients. Furthermore, such a model can help physicians and biologists in the elucidation of molecular dynamics underlying the aberrations-waterfall model behind carcinogenesis. By showing results obtained on a real-world dataset, we try to give some hints about further approach to the knowledge-driven validations of such hypotheses

Pattern matching in high energy physics by using neural network and genetic algorithm

In this paper two different approaches to provide information from events by high energy physics experiments are shown. Usually the representations produced in such experiments are spot-composed and the classical algorithms to be needed for data analysis are time consuming. For this reason the possibility to speed up pattern recognition tasks by soft computing approach with parallel algorithms has been investigated. The first scheme shown in the following is a two-layer neural network with forward connections, the second one consists of an evolutionary algorithm with elitistic strategy and mutation and cross-over adaptive probability. Test results of these approaches have been carried out analysing a set of images produced by an optical ring imaging Cherenkov (RICH) detector at CERN

Deep Learning for Processing Electromyographic Signals: a Taxonomy-based Survey

Deep Learning (DL) has been recently employed to build smart systems that perform incredibly well in a wide range of tasks, such as image recognition, machine translation, and self-driving cars. In several fields the considerable improvement in the computing hardware and the increasing need for big data analytics has boosted DL work. In recent years physiological signal processing has strongly benefited from deep learning. In general, there is an exponential increase in the number of studies concerning the processing of electromyographic (EMG) signals using DL methods. This phenomenon is mostly explained by the current limitation of myoelectric controlled prostheses as well as the recent release of large EMG recording datasets, e.g. Ninapro. Such a growing trend has inspired us to seek and review recent papers focusing on processing EMG signals using DL methods. Referring to the Scopus database, a systematic literature search of papers published between January 2014 and March 2019 was carried out, and sixty-five papers were chosen for review after a full text analysis. The bibliometric research revealed that the reviewed papers can be grouped in four main categories according to the final application of the EMG signal analysis: Hand Gesture Classification, Speech and Emotion Classification, Sleep Stage Classification and Other Applications. The review process also confirmed the increasing trend in terms of published papers, the number of papers published in 2018 is indeed four times the amount of papers published the year before. As expected, most of the analyzed papers (≈60 %) concern the identification of hand gestures, thus supporting our hypothesis. Finally, it is worth reporting that the convolutional neural network (CNN) is the most used topology among the several involved DL architectures, in fact, the sixty percent approximately of the reviewed articles consider a CNN

An attention-based deep learning approach for the classification of subjective cognitive decline and mild cognitive impairment using resting-state EEG

Objective. This study aims to design and implement the first deep learning (DL) model to classify subjects in the prodromic states of Alzheimer's disease (AD) based on resting-state electroencephalographic (EEG) signals.Approach. EEG recordings of 17 healthy controls (HCs), 56 subjective cognitive decline (SCD) and 45 mild cognitive impairment (MCI) subjects were acquired at resting state. After preprocessing, we selected sections corresponding to eyes-closed condition. Five different datasets were created by extracting delta, theta, alpha, beta and delta-to-theta frequency bands using bandpass filters. To classify SCDvsMCI and HCvsSCDvsMCI, we propose a framework based on the transformer architecture, which uses multi-head attention to focus on the most relevant parts of the input signals. We trained and validated the model on each dataset with a leave-one-subject-out cross-validation approach, splitting the signals into 10 s epochs. Subjects were assigned to the same class as the majority of their epochs. Classification performances of the transformer were assessed for both epochs and subjects and compared with other DL models.Main results. Results showed that the delta dataset allowed our model to achieve the best performances for the discrimination of SCD and MCI, reaching an Area Under the ROC Curve (AUC) of 0.807, while the highest results for the HCvsSCDvsMCI classification were obtained on alpha and theta with a micro-AUC higher than 0.74.Significance. We demonstrated that DL approaches can support the adoption of non-invasive and economic techniques as EEG to stratify patients in the clinical population at risk for AD. This result was achieved since the attention mechanism was able to learn temporal dependencies of the signal, focusing on the most discriminative patterns, achieving state-of-the-art results by using a deep model of reduced complexity. Our results were consistent with clinical evidence that changes in brain activity are progressive when considering early stages of AD

Proposal of a health care network based on big data analytics for PDs

Health care networks for Parkinson's disease (PD) already exist and have been already proposed in the literature, but most of them are not able to analyse the vast volume of data generated from medical examinations and collected and organised in a pre-defined manner. In this work, the authors propose a novel health care network based on big data analytics for PD. The main goal of the proposed architecture is to support clinicians in the objective assessment of the typical PD motor issues and alterations. The proposed health care network has the ability to retrieve a vast volume of acquired heterogeneous data from a Data warehouse and train an ensemble SVM to classify and rate the motor severity of a PD patient. Once the network is trained, it will be able to analyse the data collected during motor examinations of a PD patient and generate a diagnostic report on the basis of the previously acquired knowledge. Such a diagnostic report represents a tool both to monitor the follow up of the disease for each patient and give robust advice about the severity of the disease to clinicians

Association of Neuroretinal Thinning and Microvascular Changes with Hypertension in an Older Population in Southern Italy.

Retinal microvasculature assessment at capillary level may potentially aid the evaluation of early microvascular changes due to hypertension. We aimed to investigate associations between the measures obtained using optical coherence tomography (OCT) and OCT-angiography (OCT-A) and hypertension, in a southern Italian older population. We performed a cross-sectional analysis from a population-based study on 731 participants aged 65 years+ subdivided into two groups according to the presence or absence of blood hypertension without hypertensive retinopathy. The average thickness of the ganglion cell complex (GCC) and the retinal nerve fiber layer (RNFL) were measured. The foveal avascular zone area, vascular density (VD) at the macular site and of the optic nerve head (ONH) and radial peripapillary capillary (RPC) plexi were evaluated. Logistic regression was applied to assess the association of ocular measurements with hypertension. GCC thickness was inversely associated with hypertension (odds ratio (OR): 0.98, 95% confidence interval (CI): 0.97-1). A rarefaction of VD of the ONH plexus at the inferior temporal sector (OR: 0.95, 95% CI: 0.91-0.99) and, conversely, a higher VD of the ONH and RPC plexi inside optic disc (OR: 1.07, 95% CI: 1.04-1.10; OR: 1.04, 95% CI: 1.02-1.06, respectively) were significantly associated with hypertension. A neuroretinal thinning involving GCC and a change in capillary density at the peripapillary network were related to the hypertension in older patients without hypertensive retinopathy. Assessing peripapillary retinal microvasculature using OCT-A may be a useful non-invasive approach to detect early microvascular changes due to hypertension